Geobacteraceae
Family of bacteria
The Geobacteraceae are a family within the Thermodesulfobacteriota.
Phylogeny
The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)[2] and National Center for Biotechnology Information (NCBI)[3]
16S rRNA based LTP_10_2024[4][5][6]
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120 marker proteins based GTDB 09-RS220[7][8][9]
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Geobacteraceae
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Geobacter
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Geoanaerobacter
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Geomobilimonas
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Geotalea
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Geomesophilobacter
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Geomonas [incl. Citrifermentans Waite et al. 2020]
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s.l.
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Geobacteraceae_A
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Geoanaerobacter Xu et al. 2022
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"Geomobilibacter" Xu et al. 2021
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"Pseudopelobacteraceae"
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Trichlorobacter De Wever et al. 2001
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Oryzomonas Xu et al. 2020
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Pelotalea Xu et al. 2022
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"Pseudopelobacter" Waite et al. 2020
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Geobacteraceae s.s.
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Geobacter Lovley et al. 1995
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Geomobilimonas Xu et al. 2022
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Geotalea Waite et al. 2020
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Geomesophilobacter Zhang et al. 2021
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Geomonas Xu et al. 2020 non Khan et al. 2020 [incl. Citrifermentans]
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See also
References
- ^ Waite DW, Chuvochina M, Pelikan C, Parks DH, Yilmaz P, Wagner M, Loy A, Naganuma T, Nakai R, Whitman WB, Hahn MW, Kuever J, Hugenholtz P. (2020). "Proposal to reclassify the proteobacterial classes Deltaproteobacteria and Oligoflexia, and the phylum Thermodesulfobacteria into four phyla reflecting major functional capabilities". Int J Syst Evol Microbiol. 70 (11): 5972–6016. doi:10.1099/ijsem.0.004213. PMID 33151140.
- ^ A.C. Parte; et al. "Geobacteraceae". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved 2022-09-09.
- ^ Sayers; et al. "Geobacteraceae". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2022-09-09.
- ^ "The LTP". Retrieved 10 December 2024.
- ^ "LTP_all tree in newick format". Retrieved 10 December 2024.
- ^ "LTP_10_2024 Release Notes" (PDF). Retrieved 10 December 2024.
- ^ "GTDB release 09-RS220". Genome Taxonomy Database. Retrieved 10 May 2024.
- ^ "bac120_r220.sp_labels". Genome Taxonomy Database. Retrieved 10 May 2024.
- ^ "Taxon History". Genome Taxonomy Database. Retrieved 10 May 2024.
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Terrabacteria BV1, BV3, BV5 | others |
- Actinomycetota
- Armatimonadota
- "Abditibacteriia"
- Armatimonadia
- Chthonomonadia
- Fimbriimonadia
- "Heboniibacteriia"
- "Zipacnadia"
- "Bipolaricaulota"
- Chloroflexota
- Deinococcota
- "Dormiibacterota"
- "Sysuimicrobiota"
- Vulcanimicrobiota
- "Eudoremicrobiia"
- Vulcanimicrobiia
- "Xenobiia"
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Cyanoprokaryota |
- Cyanobacteriota
- "Margulisiibacteriota"
- "Marinamargulisbacteria"
- "Riflemargulisbacteria"
- "Saganbacteria"
- "Termititenacia"
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Firmicutes BV3 Low GC |
- Bacillota
- Bacillota A
- "Clostridiia"
- "Thermoanaerobacteria"
- Thermosediminibacteria
- Bacillota D
- Bacillota E
- Sulfobacillia
- Symbiobacteriia
- Thermaerobacteria
- Bacillota G
- "Hydrogenisporia"
- Limnochordia
- "Desulfotomaculota"
- "Carboxydocellia"
- "Carboxydothermia"
- "Dehalobacteriia"
- Desulfitobacteriia
- Desulfotomaculia
- "Moorellia"
- Peptococcia
- Syntrophomonadia
- Thermincolia
- "Halanaerobiaeota"
- "Selenobacteria"
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CPR group | |
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Thermotogida | |
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Fusobacterida |
- Fusobacteriota
- "Macinerneyibacteriota"
- "Muiribacteriota"
- "Rifleibacteriota"
- "Walliibacteriota"
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Hydrobacteria BV2, BV4 | Clade 1 |
- "Aerophobota"
- "Auribacterota"
- "Ancaeobacteria"
- "Auribacteria"
- "Erginobacteria"
- "Tritonobacteria"
- "Desantisiibacteriota"
- Elusimicrobiota
- Elusimicrobiia
- Endomicrobiia
- "Firestoneibacteriota"
- "Goldiibacteriota"
- "Omnitrophota"
- "Omnitrophia"
- "Velamenicoccia"
- "Ratteibacteriota"
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Spirochaeto bacteriobiontes | |
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PVC group (Planctobacteria) | |
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FCB group (Sphingobacteria) |
- Bacteroidota
- Calditrichota
- "Cloacimonadota"
- "Cosmopoliota"
- "Delongiibacteriota"
- "Edwardsiibacteriota"
- "Effluvivivacota"
- "Eiseniibacteriota"
- "Electryoneota"
- "Electryoneia"
- "Tariuqbacteria"
- "Fermentibacterota"
- Fibrobacterota
- Gemmatimonadota
- Gemmatimonadia
- "Glassbacteria"
- "Heilongiota"
- "Hydrothermota"
- "Hydrothermia"
- "Stahlbacteria"
- "Krumholzibacteriota"
- "Latescibacterota"
- "Handelsmanbacteria"
- "Latescibacteria"
- "Marinisomatota"
- "Tianyaibacteriota"
- "Zixiibacteriota"
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Proteobacteria BV2 | |
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others |
- "Qinglongiota"
- "Salinosulfoleibacteria"
- "Teskebacteria"
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